Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EAQ32101.1COG2064 Flp pilus assembly protein TadC. (264 aa)    
Predicted Functional Partners:
EAQ32100.1
COG4965 Flp pilus assembly protein TadB.
 
 
 0.997
EAQ32099.1
COG4962 Flp pilus assembly protein, ATPase CpaF.
 
 
 0.987
cpaB
Flp pilus assembly protein CpaB.
 
 
 0.982
EAQ32098.1
COG4964 Flp pilus assembly protein, secretin CpaC; Belongs to the bacterial secretin family.
 
 
 0.980
EAQ32093.1
Uncharacterized secreted protein.
 
    0.889
EAQ32092.1
Flp/Fap pilin-like protein.
 
     0.878
EAQ32102.1
Hypothetical protein.
 
     0.873
EAQ32094.1
Hypothetical protein.
       0.759
EAQ32095.1
Hypothetical protein, IL_1 family protein; COG1876 D-alanyl-D-alanine carboxypeptidase.
       0.741
EAQ32096.1
Hypothetical protein.
       0.741
Your Current Organism:
Idiomarina baltica
NCBI taxonomy Id: 314276
Other names: I. baltica OS145, Idiomarina baltica OS145, Idiomarina baltica str. OS145, Idiomarina baltica strain OS145
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