STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ65968.1C4-type zinc finger protein, DksA/TraR family protein; COG1734 DnaK suppressor protein. (73 aa)    
Predicted Functional Partners:
rpoC
DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.831
EAQ66476.1
Putative replication protein.
  
    0.799
EAQ65966.1
Hypothetical protein; COG3926 Putative secretion activating protein.
       0.790
EAQ65967.1
Hypothetical protein.
       0.790
EAQ65969.1
Hypothetical protein; COG0419 ATPase involved in DNA repair.
       0.790
EAQ65970.1
Hypothetical protein.
       0.733
rpoB
DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.732
EAQ65973.1
COG4383 Mu-like prophage protein gp29.
  
    0.721
EAQ65971.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
       0.720
EAQ65972.1
Prophage MuSo2, portal protein, putative; COG4373 Mu-like prophage FluMu protein gp28.
       0.720
Your Current Organism:
Marinomonas sp. MED121
NCBI taxonomy Id: 314277
Other names: M. sp. MED121
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.