STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ66068.1Hypothetical protein; COG0684 Demethylmenaquinone methyltransferase. (202 aa)    
Predicted Functional Partners:
EAQ67486.1
Acetolactate synthase III large subunit; COG0028 Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase].
    
 0.760
EAQ66667.1
B12-dependent homocysteine-N5-methyltetrahydrofolate transmethylase,repressor of metE and metF; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
     
 0.664
EAQ65695.1
COG2120 Uncharacterized proteins, LmbE homologs.
    
 0.612
EAQ65571.1
Transcriptional regulator, GntR family/amidohydrolase family protein; COG3618 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
   
 0.611
EAQ65814.1
Hypothetical protein; COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold.
 
  
 0.607
rhlB
Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. Belongs to the DEAD box helicase family. RhlB subfamily.
    
 
 0.556
EAQ64196.1
COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.
    
 
 0.556
EAQ64205.1
COG0513 Superfamily II DNA and RNA helicases.
    
 
 0.556
EAQ63194.1
COG0513 Superfamily II DNA and RNA helicases.
    
 
 0.556
rhlE
DEAD/DEAH box helicase-like; DEAD-box RNA helicase involved in ribosome assembly. Has RNA- dependent ATPase activity and unwinds double-stranded RNA.
    
 
 0.556
Your Current Organism:
Marinomonas sp. MED121
NCBI taxonomy Id: 314277
Other names: M. sp. MED121
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