STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ63940.1Transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins. (331 aa)    
Predicted Functional Partners:
EAQ63939.1
NmrA-like; COG0702 Predicted nucleoside-diphosphate-sugar epimerases.
 
     0.820
EAQ63938.1
COG5500 Predicted integral membrane protein.
 
     0.757
EAQ63344.1
Putative transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.660
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.659
EAQ63943.1
Transcriptional regulator, AraC family protein; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.646
EAQ64322.1
Glutamine amidotransferase, class-II; COG0069 Glutamate synthase domain 2.
    
  0.585
EAQ63116.1
Glutamate synthase large chain precursor; COG0067 Glutamate synthase domain 1.
    
  0.585
EAQ66141.1
Transcriptional regulator, AraC family protein; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.578
EAQ66738.1
Transcriptional regulator, AraC family protein; COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.
  
   0.516
EAQ65590.1
Hypothetical protein; COG0702 Predicted nucleoside-diphosphate-sugar epimerases.
  
     0.514
Your Current Organism:
Marinomonas sp. MED121
NCBI taxonomy Id: 314277
Other names: M. sp. MED121
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