STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ66523.1PhoH family protein; COG1875 Predicted ATPase related to phosphate starvation-inducible protein PhoH. (463 aa)    
Predicted Functional Partners:
EAQ67038.1
Putative Serine protein kinase, PrkA; COG2766 Putative Ser protein kinase.
   
  
 0.591
EAQ67037.1
Hypothetical protein; Belongs to the UPF0229 family.
   
    0.564
EAQ65383.1
COG1530 Ribonucleases G and E.
  
    0.507
EAQ67036.1
SpoVR.
   
    0.475
EAQ66309.1
COG2802 Uncharacterized protein, similar to the N-terminal domain of Lon protease.
  
     0.460
rne
Ribonuclease E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily.
  
    0.433
EAQ64263.1
Hypothetical protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
  
    0.420
EAQ66254.1
Hypothetical protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
   
    0.418
EAQ66255.1
Membrane protein, putative; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily.
  
    0.414
rpoD
RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
       0.410
Your Current Organism:
Marinomonas sp. MED121
NCBI taxonomy Id: 314277
Other names: M. sp. MED121
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