STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ66558.1COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain; Belongs to the peptidase S1C family. (464 aa)    
Predicted Functional Partners:
EAQ66561.1
RNA polymerase sigma-70 factor.
  
 
 0.957
glpK
Probable carbohydrate kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
   
 0.830
EAQ65578.1
Hypothetical protein.
  
 0.760
rplY
Probable ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
 
   0.759
rplI
50S ribosomal protein L9; Binds to the 23S rRNA.
 
 
 
 0.755
EAQ63720.1
Amino acid adenylation; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
  
 
 0.739
EAQ66160.1
Porin; COG3203 Outer membrane protein (porin).
  
 
 
 0.726
EAQ67310.1
COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1.
  
 
 0.717
EAQ63829.1
Peptidylprolyl isomerase, FKBP-type; COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1.
  
 
 0.714
EAQ65682.1
COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1.
  
 
 0.712
Your Current Organism:
Marinomonas sp. MED121
NCBI taxonomy Id: 314277
Other names: M. sp. MED121
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.