STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ64924.1Putative transcriptional regulator (AraC/XylS family protein); COG2207 AraC-type DNA-binding domain-containing proteins. (368 aa)    
Predicted Functional Partners:
EAQ64923.1
COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
 
     0.685
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.659
EAQ65000.1
COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.651
EAQ67173.1
Transcriptional regulator, AraC/XylS family protein; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.618
EAQ65323.1
Hypothetical protein; COG2207 AraC-type DNA-binding domain-containing proteins.
  
   0.617
EAQ64322.1
Glutamine amidotransferase, class-II; COG0069 Glutamate synthase domain 2.
    
  0.585
EAQ63116.1
Glutamate synthase large chain precursor; COG0067 Glutamate synthase domain 1.
    
  0.585
EAQ64215.1
Uncharacterized protein conserved in bacteria; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.570
EAQ63943.1
Transcriptional regulator, AraC family protein; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.564
EAQ64530.1
Transcriptional Regulator, AraC family protein; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.543
Your Current Organism:
Marinomonas sp. MED121
NCBI taxonomy Id: 314277
Other names: M. sp. MED121
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