Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EAQ64535.1 | EAQ66716.1 | MED121_21330 | MED121_12350 | Hypothetical protein; COG0477 Permeases of the major facilitator superfamily. | Putative lipoprotein; COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen. | 0.431 |
EAQ65943.1 | EAQ66716.1 | MED121_01990 | MED121_12350 | Hypothetical protein; COG0702 Predicted nucleoside-diphosphate-sugar epimerases. | Putative lipoprotein; COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen. | 0.460 |
EAQ66716.1 | EAQ64535.1 | MED121_12350 | MED121_21330 | Putative lipoprotein; COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen. | Hypothetical protein; COG0477 Permeases of the major facilitator superfamily. | 0.431 |
EAQ66716.1 | EAQ65943.1 | MED121_12350 | MED121_01990 | Putative lipoprotein; COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen. | Hypothetical protein; COG0702 Predicted nucleoside-diphosphate-sugar epimerases. | 0.460 |
EAQ66716.1 | EAQ66717.1 | MED121_12350 | MED121_12355 | Putative lipoprotein; COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen. | Hypothetical protein; COG2207 AraC-type DNA-binding domain-containing proteins. | 0.776 |
EAQ66716.1 | EAQ67659.1 | MED121_12350 | MED121_17069 | Putative lipoprotein; COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen. | Transcriptional regulator, AraC family protein; COG2207 AraC-type DNA-binding domain-containing proteins. | 0.416 |
EAQ66717.1 | EAQ66716.1 | MED121_12355 | MED121_12350 | Hypothetical protein; COG2207 AraC-type DNA-binding domain-containing proteins. | Putative lipoprotein; COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen. | 0.776 |
EAQ67659.1 | EAQ66716.1 | MED121_17069 | MED121_12350 | Transcriptional regulator, AraC family protein; COG2207 AraC-type DNA-binding domain-containing proteins. | Putative lipoprotein; COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen. | 0.416 |