STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdhRTranscriptional regulator of pyruvate dehydrogenase complex; COG2186 Transcriptional regulators. (248 aa)    
Predicted Functional Partners:
EAQ66947.1
COG1304 L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases.
  
  
 0.792
EAQ64138.1
phenylacetate-CoA oxygenase, PaaK subunit; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
    
  0.770
EAQ63849.1
COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
    
  0.770
EAQ64068.1
COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
    
  0.770
EAQ66369.1
COG0633 Ferredoxin.
    
  0.705
EAQ65664.1
Oxidoreductase, iron-sulfur-binding; COG0543 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases.
    
  0.705
EAQ66550.1
EntB, isochorismatase; COG3433 Aryl carrier domain.
    
   0.666
EAQ63672.1
Hypothetical protein; COG2188 Transcriptional regulators.
  
  
 0.638
accD
acetyl-CoA carboxylase beta subunit; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
  
  
 0.556
EAQ67346.1
Repressor protein PhnR, putative; COG2188 Transcriptional regulators.
  
  
 0.535
Your Current Organism:
Marinomonas sp. MED121
NCBI taxonomy Id: 314277
Other names: M. sp. MED121
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