Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EAQ64215.1 | rpoA | MED121_19099 | MED121_24229 | Uncharacterized protein conserved in bacteria; COG2207 AraC-type DNA-binding domain-containing proteins. | DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.956 |
| EAQ64215.1 | rpoB | MED121_19099 | MED121_11520 | Uncharacterized protein conserved in bacteria; COG2207 AraC-type DNA-binding domain-containing proteins. | DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.906 |
| EAQ64215.1 | rpoC | MED121_19099 | MED121_11525 | Uncharacterized protein conserved in bacteria; COG2207 AraC-type DNA-binding domain-containing proteins. | DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.888 |
| EAQ64215.1 | rpoS | MED121_19099 | MED121_16264 | Uncharacterized protein conserved in bacteria; COG2207 AraC-type DNA-binding domain-containing proteins. | Sigma S (sigma 38) factor of RNA polymerase, major sigma factor during stationary phase; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. | 0.833 |
| EAQ64215.1 | rpoZ | MED121_19099 | MED121_10854 | Uncharacterized protein conserved in bacteria; COG2207 AraC-type DNA-binding domain-containing proteins. | DNA-directed RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.888 |
| EAQ65712.1 | rpoA | MED121_09108 | MED121_24229 | Transcriptional regulator AlgQ; COG3160 Regulator of sigma D; Belongs to the Rsd/AlgQ family. | DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.665 |
| EAQ65712.1 | rpoB | MED121_09108 | MED121_11520 | Transcriptional regulator AlgQ; COG3160 Regulator of sigma D; Belongs to the Rsd/AlgQ family. | DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.661 |
| EAQ65712.1 | rpoC | MED121_09108 | MED121_11525 | Transcriptional regulator AlgQ; COG3160 Regulator of sigma D; Belongs to the Rsd/AlgQ family. | DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.663 |
| EAQ65712.1 | rpoS | MED121_09108 | MED121_16264 | Transcriptional regulator AlgQ; COG3160 Regulator of sigma D; Belongs to the Rsd/AlgQ family. | Sigma S (sigma 38) factor of RNA polymerase, major sigma factor during stationary phase; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. | 0.887 |
| EAQ65712.1 | rpoZ | MED121_09108 | MED121_10854 | Transcriptional regulator AlgQ; COG3160 Regulator of sigma D; Belongs to the Rsd/AlgQ family. | DNA-directed RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.661 |
| EAQ67499.1 | rpoS | MED121_16269 | MED121_16264 | Peptidoglycan-binding LysM:Peptidase M23B; COG0739 Membrane proteins related to metalloendopeptidases. | Sigma S (sigma 38) factor of RNA polymerase, major sigma factor during stationary phase; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. | 0.853 |
| EAQ67616.1 | rpoS | MED121_16854 | MED121_16264 | Ada regulatory protein / o-6-methylguanine-dna-alkyltransferase; COG2169 Adenosine deaminase. | Sigma S (sigma 38) factor of RNA polymerase, major sigma factor during stationary phase; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. | 0.872 |
| dnaG | nusA | MED121_07550 | MED121_07625 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Transcription elongation factor NusA; Participates in both transcription termination and antitermination. | 0.571 |
| dnaG | rpoA | MED121_07550 | MED121_24229 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.672 |
| dnaG | rpoB | MED121_07550 | MED121_11520 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.607 |
| dnaG | rpoC | MED121_07550 | MED121_11525 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.601 |
| dnaG | rpoS | MED121_07550 | MED121_16264 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Sigma S (sigma 38) factor of RNA polymerase, major sigma factor during stationary phase; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. | 0.815 |
| nusA | dnaG | MED121_07625 | MED121_07550 | Transcription elongation factor NusA; Participates in both transcription termination and antitermination. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.571 |
| nusA | rpoA | MED121_07625 | MED121_24229 | Transcription elongation factor NusA; Participates in both transcription termination and antitermination. | DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.997 |
| nusA | rpoB | MED121_07625 | MED121_11520 | Transcription elongation factor NusA; Participates in both transcription termination and antitermination. | DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.998 |
page 1 of 4