EAQ65273.1 protein (Marinomonas sp. MED121) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EAQ65273.1

Hypothetical protein. (338 aa)

Predicted Functional Partners:

EAQ64475.1

0.710

EAQ63650.1

0.666

EAQ63351.1

0.666

EAQ66931.1

0.666

EAQ63165.1

0.666

EAQ65817.1

0.533

EAQ63720.1

0.515

EAQ63722.1

0.512

EAQ63314.1

0.505

EAQ65861.1

0.505

Your Current Organism:

Marinomonas sp. MED121

NCBI taxonomy Id: 314277
Other names: M. sp. MED121

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EAQ63165.1	EAQ65273.1	MED121_19751	MED121_18570	COG3119 Arylsulfatase A and related enzymes.	Hypothetical protein.	0.666
EAQ63314.1	EAQ65273.1	MED121_00170	MED121_18570	COG0121 Predicted glutamine amidotransferase.	Hypothetical protein.	0.505
EAQ63351.1	EAQ64475.1	MED121_03195	MED121_05128	Hypothetical protein.	Hypothetical protein; COG0074 Succinyl-CoA synthetase, alpha subunit.	0.696
EAQ63351.1	EAQ65273.1	MED121_03195	MED121_18570	Hypothetical protein.	Hypothetical protein.	0.666
EAQ63650.1	EAQ65273.1	MED121_00540	MED121_18570	Hypothetical protein.	Hypothetical protein.	0.666
EAQ63720.1	EAQ63722.1	MED121_03447	MED121_03457	Amino acid adenylation; COG1020 Non-ribosomal peptide synthetase modules and related proteins.	Beta-ketoacyl synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	0.999
EAQ63720.1	EAQ65273.1	MED121_03447	MED121_18570	Amino acid adenylation; COG1020 Non-ribosomal peptide synthetase modules and related proteins.	Hypothetical protein.	0.515
EAQ63720.1	EAQ65817.1	MED121_03447	MED121_01360	Amino acid adenylation; COG1020 Non-ribosomal peptide synthetase modules and related proteins.	COG0515 Serine/threonine protein kinase.	0.719
EAQ63722.1	EAQ63720.1	MED121_03457	MED121_03447	Beta-ketoacyl synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	Amino acid adenylation; COG1020 Non-ribosomal peptide synthetase modules and related proteins.	0.999
EAQ63722.1	EAQ65273.1	MED121_03457	MED121_18570	Beta-ketoacyl synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	Hypothetical protein.	0.512
EAQ63722.1	EAQ65817.1	MED121_03457	MED121_01360	Beta-ketoacyl synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	COG0515 Serine/threonine protein kinase.	0.688
EAQ64475.1	EAQ63351.1	MED121_05128	MED121_03195	Hypothetical protein; COG0074 Succinyl-CoA synthetase, alpha subunit.	Hypothetical protein.	0.696
EAQ64475.1	EAQ65273.1	MED121_05128	MED121_18570	Hypothetical protein; COG0074 Succinyl-CoA synthetase, alpha subunit.	Hypothetical protein.	0.710
EAQ65273.1	EAQ63165.1	MED121_18570	MED121_19751	Hypothetical protein.	COG3119 Arylsulfatase A and related enzymes.	0.666
EAQ65273.1	EAQ63314.1	MED121_18570	MED121_00170	Hypothetical protein.	COG0121 Predicted glutamine amidotransferase.	0.505
EAQ65273.1	EAQ63351.1	MED121_18570	MED121_03195	Hypothetical protein.	Hypothetical protein.	0.666
EAQ65273.1	EAQ63650.1	MED121_18570	MED121_00540	Hypothetical protein.	Hypothetical protein.	0.666
EAQ65273.1	EAQ63720.1	MED121_18570	MED121_03447	Hypothetical protein.	Amino acid adenylation; COG1020 Non-ribosomal peptide synthetase modules and related proteins.	0.515
EAQ65273.1	EAQ63722.1	MED121_18570	MED121_03457	Hypothetical protein.	Beta-ketoacyl synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.	0.512
EAQ65273.1	EAQ64475.1	MED121_18570	MED121_05128	Hypothetical protein.	Hypothetical protein; COG0074 Succinyl-CoA synthetase, alpha subunit.	0.710