Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| EAQ63520.1 | EAQ65139.1 | MED121_19936 | MED121_10475 | Hypothetical protein; COG0468 RecA/RadA recombinase. | DNA polymerase III, beta chain; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of r [...] | 0.866 |
| EAQ63520.1 | EAQ65455.1 | MED121_19936 | MED121_22327 | Hypothetical protein; COG0468 RecA/RadA recombinase. | SOS mutagenesis and repair; COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | 0.778 |
| EAQ63520.1 | EAQ65456.1 | MED121_19936 | MED121_22332 | Hypothetical protein; COG0468 RecA/RadA recombinase. | UmuD protein; COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); Belongs to the peptidase S24 family. | 0.894 |
| EAQ63520.1 | EAQ65914.1 | MED121_19936 | MED121_01845 | Hypothetical protein; COG0468 RecA/RadA recombinase. | COG0417 DNA polymerase elongation subunit (family B). | 0.753 |
| EAQ63520.1 | EAQ66790.1 | MED121_19936 | MED121_12720 | Hypothetical protein; COG0468 RecA/RadA recombinase. | Hypothetical protein; Belongs to the peptidase S24 family. | 0.888 |
| EAQ63520.1 | lexA | MED121_19936 | MED121_00430 | Hypothetical protein; COG0468 RecA/RadA recombinase. | Regulator for SOS(lexA) regulon; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.894 |
| EAQ63520.1 | rapA | MED121_19936 | MED121_13865 | Hypothetical protein; COG0468 RecA/RadA recombinase. | ATP-dependent helicase HepA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily. | 0.824 |
| EAQ63520.1 | recA | MED121_19936 | MED121_20236 | Hypothetical protein; COG0468 RecA/RadA recombinase. | Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.850 |
| EAQ63520.1 | recA-2 | MED121_19936 | MED121_19941 | Hypothetical protein; COG0468 RecA/RadA recombinase. | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.525 |
| EAQ65139.1 | EAQ63520.1 | MED121_10475 | MED121_19936 | DNA polymerase III, beta chain; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of r [...] | Hypothetical protein; COG0468 RecA/RadA recombinase. | 0.866 |
| EAQ65139.1 | EAQ65455.1 | MED121_10475 | MED121_22327 | DNA polymerase III, beta chain; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of r [...] | SOS mutagenesis and repair; COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | 0.941 |
| EAQ65139.1 | EAQ65914.1 | MED121_10475 | MED121_01845 | DNA polymerase III, beta chain; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of r [...] | COG0417 DNA polymerase elongation subunit (family B). | 0.995 |
| EAQ65139.1 | rapA | MED121_10475 | MED121_13865 | DNA polymerase III, beta chain; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of r [...] | ATP-dependent helicase HepA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair; Belongs to the SNF2/RAD54 helicase family. RapA subfamily. | 0.958 |
| EAQ65139.1 | recA | MED121_10475 | MED121_20236 | DNA polymerase III, beta chain; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of r [...] | Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.848 |
| EAQ65139.1 | recA-2 | MED121_10475 | MED121_19941 | DNA polymerase III, beta chain; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of r [...] | RecA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.848 |
| EAQ65455.1 | EAQ63520.1 | MED121_22327 | MED121_19936 | SOS mutagenesis and repair; COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | Hypothetical protein; COG0468 RecA/RadA recombinase. | 0.778 |
| EAQ65455.1 | EAQ65139.1 | MED121_22327 | MED121_10475 | SOS mutagenesis and repair; COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | DNA polymerase III, beta chain; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of r [...] | 0.941 |
| EAQ65455.1 | EAQ65456.1 | MED121_22327 | MED121_22332 | SOS mutagenesis and repair; COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | UmuD protein; COG1974 SOS-response transcriptional repressors (RecA-mediated autopeptidases); Belongs to the peptidase S24 family. | 0.986 |
| EAQ65455.1 | EAQ65682.1 | MED121_22327 | MED121_08958 | SOS mutagenesis and repair; COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | COG0545 FKBP-type peptidyl-prolyl cis-trans isomerases 1. | 0.709 |
| EAQ65455.1 | EAQ65914.1 | MED121_22327 | MED121_01845 | SOS mutagenesis and repair; COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA repair. | COG0417 DNA polymerase elongation subunit (family B). | 0.929 |
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