STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ64773.1COG1309 Transcriptional regulator. (205 aa)    
Predicted Functional Partners:
EAQ64774.1
Hypothetical protein; COG1834 N-Dimethylarginine dimethylaminohydrolase.
 
     0.847
betA
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
 
 
 0.635
EAQ66962.1
Oxidoreductase, GMC family protein; COG2303 Choline dehydrogenase and related flavoproteins.
 
 
 0.611
EAQ65244.1
Glucose-methanol-choline oxidoreductase; COG2303 Choline dehydrogenase and related flavoproteins.
 
 
 0.609
EAQ64776.1
Putative periplasmic binding abc transporter protein; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
 
   0.585
EAQ64778.1
Polar amino acid uptake family ABC transporter, permease protein; COG4160 ABC-type arginine/histidine transport system, permease component.
 
     0.544
EAQ64775.1
Histidine transport ATP-binding protein HisP; COG4598 ABC-type histidine transport system, ATPase component.
       0.512
EAQ63720.1
Amino acid adenylation; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
     
 0.490
EAQ64777.1
COG4215 ABC-type arginine transport system, permease component.
 
   
 0.479
EAQ65584.1
COG0723 Rieske Fe-S protein.
  
     0.475
Your Current Organism:
Marinomonas sp. MED121
NCBI taxonomy Id: 314277
Other names: M. sp. MED121
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