STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR21055.1COG0729 Outer membrane protein. (575 aa)    
Predicted Functional Partners:
EAR21056.1
COG2911 Uncharacterized protein conserved in bacteria.
 
 0.998
EAR20631.1
Hypothetical protein.
  
 
 0.643
EAR21058.1
Hypothetical protein.
       0.510
EAR20899.1
COG4966 Tfp pilus assembly protein PilW.
  
     0.425
EAR22213.1
Hypothetical protein; COG0457 FOG: TPR repeat.
  
     0.417
EAR21169.1
COG0642 Signal transduction histidine kinase.
  
    0.410
EAR20898.1
Putative pre-pilin leader sequence; COG4967 Tfp pilus assembly protein PilV.
  
     0.400
Your Current Organism:
Nitrococcus mobilis
NCBI taxonomy Id: 314278
Other names: N. mobilis Nb-231, Nitrococcus mobilis Nb-231, Nitrococcus mobilis str. Nb-231, Nitrococcus mobilis strain Nb-231
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.