node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EAR21072.1 | rplO | NB231_07877 | NB231_08002 | Hypothetical protein; COG1530 Ribonucleases G and E. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.999 |
EAR21072.1 | rpmD | NB231_07877 | NB231_08007 | Hypothetical protein; COG1530 Ribonucleases G and E. | COG1841 Ribosomal protein L30/L7E. | 0.999 |
EAR21072.1 | rpsB | NB231_07877 | NB231_01284 | Hypothetical protein; COG1530 Ribonucleases G and E. | COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
EAR21072.1 | rpsD | NB231_07877 | NB231_07977 | Hypothetical protein; COG1530 Ribonucleases G and E. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
EAR21072.1 | rpsK | NB231_07877 | NB231_07982 | Hypothetical protein; COG1530 Ribonucleases G and E. | 30S ribosomal subunit protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
EAR21072.1 | rpsM | NB231_07877 | NB231_07987 | Hypothetical protein; COG1530 Ribonucleases G and E. | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |
EAR21072.1 | rpsO | NB231_07877 | NB231_03752 | Hypothetical protein; COG1530 Ribonucleases G and E. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.999 |
EAR21072.1 | secY | NB231_07877 | NB231_07997 | Hypothetical protein; COG1530 Ribonucleases G and E. | Preprotein translocase SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.941 |
rplO | EAR21072.1 | NB231_08002 | NB231_07877 | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | Hypothetical protein; COG1530 Ribonucleases G and E. | 0.999 |
rplO | rplQ | NB231_08002 | NB231_07967 | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | COG0203 Ribosomal protein L17. | 0.999 |
rplO | rpmD | NB231_08002 | NB231_08007 | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | COG1841 Ribosomal protein L30/L7E. | 0.999 |
rplO | rpmJ | NB231_08002 | NB231_07992 | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | COG0257 Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. | 0.999 |
rplO | rpsB | NB231_08002 | NB231_01284 | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family. | 0.999 |
rplO | rpsD | NB231_08002 | NB231_07977 | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
rplO | rpsK | NB231_08002 | NB231_07982 | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 30S ribosomal subunit protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
rplO | rpsM | NB231_08002 | NB231_07987 | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.999 |
rplO | rpsO | NB231_08002 | NB231_03752 | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.999 |
rplO | secY | NB231_08002 | NB231_07997 | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | Preprotein translocase SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.999 |
rplQ | rplO | NB231_07967 | NB231_08002 | COG0203 Ribosomal protein L17. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.999 |
rplQ | rpmD | NB231_07967 | NB231_08007 | COG0203 Ribosomal protein L17. | COG1841 Ribosomal protein L30/L7E. | 0.999 |