STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR22401.1Radical SAM domain Fe-S oxidoreductase; COG0535 Predicted Fe-S oxidoreductases. (385 aa)    
Predicted Functional Partners:
EAR22402.1
Glycosyl transferase, group 2 family protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
   
 0.935
EAR22397.1
Terpene synthase/Squalene cyclase; COG1657 Squalene cyclase.
   
 0.926
EAR20963.1
Putative membrane protein actII-3; COG1033 Predicted exporters of the RND superfamily.
 
   
 0.792
EAR22398.1
Purine and other phosphorylase, family 1; COG0775 Nucleoside phosphorylase.
 
   
 0.784
EAR20964.1
Radical SAM.
 
  
 0.782
EAR20966.1
Dihydrokaempferol 4-reductase; COG0451 Nucleoside-diphosphate-sugar epimerases.
  
     0.773
ribB
GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.698
EAR21016.1
Hypothetical protein; COG0392 Predicted integral membrane protein.
  
     0.682
EAR22650.1
Adenylate/Guanylate Cyclase; COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain.
   
 
  0.650
ispH-2
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
     
 0.620
Your Current Organism:
Nitrococcus mobilis
NCBI taxonomy Id: 314278
Other names: N. mobilis Nb-231, Nitrococcus mobilis Nb-231, Nitrococcus mobilis str. Nb-231, Nitrococcus mobilis strain Nb-231
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