STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR08884.1Hypothetical protein. (319 aa)    
Predicted Functional Partners:
EAR08885.1
Hypothetical protein.
  
 0.991
EAR10988.1
COG3166 Tfp pilus assembly protein PilN.
 
 0.969
EAR08888.1
COG1450 Type II secretory pathway, component PulD; Belongs to the bacterial secretin family.
 
  
 0.957
EAR08886.1
Hypothetical protein; COG0188 Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit.
 
   
 0.956
EAR08893.1
COG1459 Type II secretory pathway, component PulF.
 
 
 
 0.942
EAR08892.1
COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
 
 
 0.934
EAR10991.1
Type 4 fimbrial biogenesis protein PilQ; COG4796 Type II secretory pathway, component HofQ.
 
 
 0.874
EAR08889.1
COG3267 Type II secretory pathway, component ExeA (predicted ATPase).
 
    0.846
EAR10989.1
Type 4 fimbrial biogenesis protein PilO; COG3167 Tfp pilus assembly protein PilO.
 
 
 0.827
EAR10990.1
COG3168 Tfp pilus assembly protein PilP.
 
 
 0.818
Your Current Organism:
Reinekea blandensis
NCBI taxonomy Id: 314283
Other names: R. blandensis MED297, Reinekea blandensis MED297, Reinekea blandensis str. MED297, Reinekea blandensis strain MED297, Reinekea sp. MED297
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.