STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR09956.1Hypothetical transcriptional regulator, AraC/XylS family protein; COG2207 AraC-type DNA-binding domain-containing proteins. (270 aa)    
Predicted Functional Partners:
EAR11422.1
Pyruvate ferredoxin/flavodoxin oxidoreductase family protein; COG0674 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit.
     
 0.850
EAR10995.1
COG0067 Glutamate synthase domain 1.
    
  0.771
EAR11077.1
Glutamate synthase, large subunit, GOGAT; COG0067 Glutamate synthase domain 1.
    
  0.771
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.695
EAR08442.1
Transcriptional regulator, AraC/XylS family protein; COG2207 AraC-type DNA-binding domain-containing proteins.
 
   0.677
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.672
EAR11438.1
Hypothetical protein; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.640
EAR08088.1
COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.634
EAR10008.1
COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain.
 
 
 0.615
EAR11058.1
Transcriptional regulator, AraC family protein; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.610
Your Current Organism:
Reinekea blandensis
NCBI taxonomy Id: 314283
Other names: R. blandensis MED297, Reinekea blandensis MED297, Reinekea blandensis str. MED297, Reinekea blandensis strain MED297, Reinekea sp. MED297
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