STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR08043.1ABC polyamine/opine transporter, inner membrane subunit; COG1177 ABC-type spermidine/putrescine transport system, permease component II. (286 aa)    
Predicted Functional Partners:
EAR08044.1
Polyamine ABC transporter, permease protein; COG1176 ABC-type spermidine/putrescine transport system, permease component I.
 
 0.999
EAR10505.1
COG0687 Spermidine/putrescine-binding periplasmic protein.
 
 0.998
EAR08045.1
Polyamine ABC trasnporter, periplasmic polyamine-binding protein; COG0687 Spermidine/putrescine-binding periplasmic protein.
 
 
 0.997
potA
ABC polyamine/opine transporter, ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 0.994
EAR09068.1
ABC transporter related protein; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components; Belongs to the ABC transporter superfamily.
 
 0.968
EAR09134.1
Putative GTP-binding protein; COG0419 ATPase involved in DNA repair.
    
 0.700
EAR09079.1
COG1840 ABC-type Fe3+ transport system, periplasmic component.
  
 
 0.691
EAR10969.1
Hypothetical protein; COG4134 ABC-type uncharacterized transport system, periplasmic component.
    
  0.688
EAR08679.1
Sugar ABC transportor, ATP-binding protein; COG3839 ABC-type sugar transport systems, ATPase components; Belongs to the ABC transporter superfamily.
  
 0.643
ugpC
Glycerol-3-phosphate ABC transporter, ATP-binding protein; Part of the ABC transporter complex UgpABCE involved in sn- glycerol-3-phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. sn-glycerol-3- phosphate importer (TC 3.A.1.1.3) family.
  
 0.638
Your Current Organism:
Reinekea blandensis
NCBI taxonomy Id: 314283
Other names: R. blandensis MED297, Reinekea blandensis MED297, Reinekea blandensis str. MED297, Reinekea blandensis strain MED297, Reinekea sp. MED297
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.