STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR09973.1COG0671 Membrane-associated phospholipid phosphatase. (287 aa)    
Predicted Functional Partners:
EAR10847.1
COG0584 Glycerophosphoryl diester phosphodiesterase.
 
 0.864
EAR10580.1
Possible cytochrome P450 family proteins; COG2124 Cytochrome P450.
   
 0.854
rplF
Ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
   
 0.835
EAR07916.1
COG1216 Predicted glycosyltransferases.
  
 
 0.742
EAR11152.1
Hypothetical protein; COG0798 Arsenite efflux pump ACR3 and related permeases.
    
 
 0.728
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
   0.717
EAR10085.1
Ankyrin-related protein; COG0666 FOG: Ankyrin repeat.
  
 
 0.582
EAR07955.1
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
    
 0.573
EAR07983.1
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
    
 0.573
EAR09716.1
Putative acid-CoA ligase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
    
 0.573
Your Current Organism:
Reinekea blandensis
NCBI taxonomy Id: 314283
Other names: R. blandensis MED297, Reinekea blandensis MED297, Reinekea blandensis str. MED297, Reinekea blandensis strain MED297, Reinekea sp. MED297
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.