STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR08746.1COG3064 Membrane protein involved in colicin uptake. (323 aa)    
Predicted Functional Partners:
EAR08745.1
Flagellar hook protein FlgE.
       0.765
EAR08021.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
  
     0.687
EAR10035.1
Hypothetical protein; COG2931 RTX toxins and related Ca2+-binding proteins.
  
     0.625
EAR11002.1
Hypothetical protein.
  
     0.611
EAR07965.1
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.
  
     0.564
EAR09406.1
COG0784 FOG: CheY-like receiver.
  
     0.553
EAR09436.1
COG0835 Chemotaxis signal transduction protein.
  
    0.537
EAR09407.1
Chemotaxis protein; COG4108 Peptide chain release factor RF-3.
  
     0.519
EAR08742.1
Hypothetical protein; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
       0.516
bioC
Biotin synthesis protein BioC; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.
       0.516
Your Current Organism:
Reinekea blandensis
NCBI taxonomy Id: 314283
Other names: R. blandensis MED297, Reinekea blandensis MED297, Reinekea blandensis str. MED297, Reinekea blandensis strain MED297, Reinekea sp. MED297
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.