STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR08813.1Diheme cytochrome c; COG3005 Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit. (200 aa)    
Predicted Functional Partners:
EAR08812.1
Mono-heme class I cytochrome c.
 
  
 0.941
EAR08811.1
Cytochrome b, putative; COG3658 Cytochrome b.
     0.905
EAR08816.1
COG0642 Signal transduction histidine kinase.
 
     0.848
EAR08814.1
COG3212 Predicted membrane protein.
       0.794
EAR08815.1
COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
       0.773
EAR11013.1
Putative phosphodiesterase; COG2199 FOG: GGDEF domain.
   
 
 0.690
EAR09528.1
Hypothetical protein; COG2202 FOG: PAS/PAC domain.
   
 
 0.690
EAR10516.1
Predicted signal transduction protein containing sensor and EAL domains; COG2200 FOG: EAL domain.
   
 
 0.664
EAR07972.1
GGDEF family protein; COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
   
 
 0.664
EAR10076.1
Predicted signal transduction protein containing sensor and EAL domains; COG2199 FOG: GGDEF domain.
   
 
 0.664
Your Current Organism:
Reinekea blandensis
NCBI taxonomy Id: 314283
Other names: R. blandensis MED297, Reinekea blandensis MED297, Reinekea blandensis str. MED297, Reinekea blandensis strain MED297, Reinekea sp. MED297
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.