Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EAR07627.1 | EAR11000.1 | MED297_17497 | MED297_10831 | Putative ABC transporter ATP-binding protein; COG4615 ABC-type siderophore export system, fused ATPase and permease components. | COG2366 Protein related to penicillin acylase. | 0.543 |
EAR09080.1 | EAR11000.1 | MED297_17098 | MED297_10831 | Hypothetical protein; COG3000 Sterol desaturase. | COG2366 Protein related to penicillin acylase. | 0.448 |
EAR10346.1 | EAR11000.1 | MED297_00955 | MED297_10831 | Hypothetical protein; COG3000 Sterol desaturase. | COG2366 Protein related to penicillin acylase. | 0.426 |
EAR11000.1 | EAR07627.1 | MED297_10831 | MED297_17497 | COG2366 Protein related to penicillin acylase. | Putative ABC transporter ATP-binding protein; COG4615 ABC-type siderophore export system, fused ATPase and permease components. | 0.543 |
EAR11000.1 | EAR09080.1 | MED297_10831 | MED297_17098 | COG2366 Protein related to penicillin acylase. | Hypothetical protein; COG3000 Sterol desaturase. | 0.448 |
EAR11000.1 | EAR10346.1 | MED297_10831 | MED297_00955 | COG2366 Protein related to penicillin acylase. | Hypothetical protein; COG3000 Sterol desaturase. | 0.426 |
EAR11000.1 | parC | MED297_10831 | MED297_10836 | COG2366 Protein related to penicillin acylase. | DNA topoisomerase IV, A subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily. | 0.456 |
parC | EAR11000.1 | MED297_10836 | MED297_10831 | DNA topoisomerase IV, A subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily. | COG2366 Protein related to penicillin acylase. | 0.456 |