STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR10203.1Predicted permease; COG0577 ABC-type antimicrobial peptide transport system, permease component. (834 aa)    
Predicted Functional Partners:
EAR10202.1
Hypothetical protein; COG5621 Predicted secreted hydrolase.
  
 0.981
EAR10204.1
Putative ABC transporter, ATP-binding protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
 
 
 0.964
greB
Transcription elongation factor GreB; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length.
     
 0.646
mnmC
Hypothetical protein; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family.
       0.620
EAR10207.1
Hypothetical protein.
       0.620
EAR07372.1
Hypothetical protein; COG0481 Membrane GTPase LepA.
 
     0.570
lolD
ABC transporter, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner. Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.
  
 
 0.568
EAR10533.1
Putative ABC transporter, ATP-binding protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
  
 
 0.549
EAR07540.1
ABC transporter, ATP-binding protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
  
 
 0.549
EAR07324.1
ABC transporter, ATP-binding protein; COG1136 ABC-type antimicrobial peptide transport system, ATPase component.
  
 
 0.549
Your Current Organism:
Reinekea blandensis
NCBI taxonomy Id: 314283
Other names: R. blandensis MED297, Reinekea blandensis MED297, Reinekea blandensis str. MED297, Reinekea blandensis strain MED297, Reinekea sp. MED297
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.