STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR08268.1COG3101 Uncharacterized protein conserved in bacteria. (166 aa)    
Predicted Functional Partners:
EAR09551.1
Hypothetical protein; COG0730 Predicted permeases.
 
    0.785
EAR09531.1
Radical SAM domain protein; COG1509 Lysine 2,3-aminomutase.
  
   
 0.590
EAR08267.1
Multi antimicrobial extrusion protein MatE; COG0534 Na+-driven multidrug efflux pump.
       0.576
EAR10528.1
COG3139 Uncharacterized protein conserved in bacteria.
  
     0.540
efp
Translation elongation factor P; Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation; Belongs to the elongation factor P family.
  
   
 0.517
EAR07305.1
Hypothetical protein; COG0730 Predicted permeases.
 
    0.495
EAR07492.1
Hypothetical protein; COG0730 Predicted permeases.
  
    0.461
rnpA
Ribonuclease P; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
     0.428
EAR08370.1
tRNA-(ms[2]io[6]A)-hydroxylase; COG4445 Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA.
  
     0.426
EAR09533.1
lysyl-tRNA synthetase; COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II).
  
   
 0.406
Your Current Organism:
Reinekea blandensis
NCBI taxonomy Id: 314283
Other names: R. blandensis MED297, Reinekea blandensis MED297, Reinekea blandensis str. MED297, Reinekea blandensis strain MED297, Reinekea sp. MED297
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.