STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR08733.1Hypothetical protein. (378 aa)    
Predicted Functional Partners:
EAR08734.1
SqdX; COG0438 Glycosyltransferase.
 
 
 0.990
htpG
Heat shock protein 90; Molecular chaperone. Has ATPase activity.
  
 0.884
EAR11317.1
Probable sensor/response regulator hybrid; COG0642 Signal transduction histidine kinase.
   
 0.881
alaS
Alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.875
EAR10085.1
Ankyrin-related protein; COG0666 FOG: Ankyrin repeat.
  
 0.865
EAR09148.1
Hypothetical tryptophan-rich sensor protein; COG0642 Signal transduction histidine kinase.
   
 0.850
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
 0.840
EAR07363.1
COG2319 FOG: WD40 repeat.
    
 0.835
EAR10265.1
Hypothetical protein; COG1033 Predicted exporters of the RND superfamily.
    
 0.835
EAR08152.1
Probable heat-shock protein Hsp 70; COG0443 Molecular chaperone.
  
 0.832
Your Current Organism:
Reinekea blandensis
NCBI taxonomy Id: 314283
Other names: R. blandensis MED297, Reinekea blandensis MED297, Reinekea blandensis str. MED297, Reinekea blandensis strain MED297, Reinekea sp. MED297
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.