STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR08380.1Hypothetical protein. (75 aa)    
Predicted Functional Partners:
EAR07630.1
COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
 
     0.730
EAR08381.1
COG2902 NAD-specific glutamate dehydrogenase.
 
     0.698
EAR09414.1
Protein containing CheW-like domain.
  
     0.675
EAR07976.1
Predicted signal transduction protein.
  
     0.635
EAR08884.1
Hypothetical protein.
  
     0.619
EAR08353.1
Hypothetical protein.
  
     0.590
pyrD
Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily.
       0.582
EAR08474.1
COG3147 Uncharacterized protein conserved in bacteria.
  
     0.563
EAR10150.1
COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component.
  
     0.540
EAR08003.1
COG3144 Flagellar hook-length control protein.
  
     0.531
Your Current Organism:
Reinekea blandensis
NCBI taxonomy Id: 314283
Other names: R. blandensis MED297, Reinekea blandensis MED297, Reinekea blandensis str. MED297, Reinekea blandensis strain MED297, Reinekea sp. MED297
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.