STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR09148.1Hypothetical tryptophan-rich sensor protein; COG0642 Signal transduction histidine kinase. (888 aa)    
Predicted Functional Partners:
EAR07733.1
COG2204 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains.
 
 0.999
EAR10613.1
PAS; COG0642 Signal transduction histidine kinase.
 
0.999
EAR11317.1
Probable sensor/response regulator hybrid; COG0642 Signal transduction histidine kinase.
 
0.999
EAR08975.1
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
 
 0.998
EAR08839.1
Hypothetical 1041 kDa protein in hypE 3'region; COG2199 FOG: GGDEF domain.
 
 0.998
EAR10569.1
Two-component system sensor histidine kinase/response regulator, hybrid ('one-component system'); COG0642 Signal transduction histidine kinase.
 
0.998
EAR10612.1
GGDEF; COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain.
 0.998
EAR10337.1
Sensor/response regulator hybrid; COG0642 Signal transduction histidine kinase.
 
0.997
EAR07505.1
Two-component system sensor histidine kinase/response regulator, hybrid ('one-component system'); COG0477 Permeases of the major facilitator superfamily.
  
 0.997
EAR10025.1
Response regulator/sensory box/GGDEF domain/EAL domain protein; COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain.
 0.997
Your Current Organism:
Reinekea blandensis
NCBI taxonomy Id: 314283
Other names: R. blandensis MED297, Reinekea blandensis MED297, Reinekea blandensis str. MED297, Reinekea blandensis strain MED297, Reinekea sp. MED297
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