STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR07630.1COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain. (716 aa)    
Predicted Functional Partners:
EAR07987.1
SAM (and some other nucleotide) binding motif:TPR repeat; COG0457 FOG: TPR repeat.
 
 
 0.791
EAR09040.1
Hypothetical protein; COG0847 DNA polymerase III, epsilon subunit and related 3'-5' exonucleases.
  
     0.737
EAR08380.1
Hypothetical protein.
 
     0.730
EAR09407.1
Chemotaxis protein; COG4108 Peptide chain release factor RF-3.
  
     0.712
EAR11002.1
Hypothetical protein.
  
     0.701
EAR10265.1
Hypothetical protein; COG1033 Predicted exporters of the RND superfamily.
 
    0.690
EAR10927.1
Hypothetical protein; COG0445 NAD/FAD-utilizing enzyme apparently involved in cell division.
  
     0.673
EAR07976.1
Predicted signal transduction protein.
  
     0.613
cmoB
Methyltransferase, putative; Catalyzes carboxymethyl transfer from carboxy-S-adenosyl-L- methionine (Cx-SAM) to 5-hydroxyuridine (ho5U) to form 5- carboxymethoxyuridine (cmo5U) at position 34 in tRNAs.
 
 
 0.579
EAR08378.1
COG3130 Ribosome modulation factor.
  
     0.564
Your Current Organism:
Reinekea blandensis
NCBI taxonomy Id: 314283
Other names: R. blandensis MED297, Reinekea blandensis MED297, Reinekea blandensis str. MED297, Reinekea blandensis strain MED297, Reinekea sp. MED297
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.