STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR11215.1PAS:GGDEF; COG2199 FOG: GGDEF domain. (876 aa)    
Predicted Functional Partners:
EAR11317.1
Probable sensor/response regulator hybrid; COG0642 Signal transduction histidine kinase.
 
 0.997
EAR08975.1
Diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); COG5001 Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain.
 
0.994
EAR10613.1
PAS; COG0642 Signal transduction histidine kinase.
  
 0.994
EAR10909.1
Putative Sensory box histidine kinase/response regulator; COG0591 Na+/proline symporter.
  
 0.991
EAR07984.1
COG0591 Na+/proline symporter.
  
 0.991
EAR10614.1
Hypothetical protein; COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain.
 
0.990
EAR11013.1
Putative phosphodiesterase; COG2199 FOG: GGDEF domain.
 
0.989
EAR09528.1
Hypothetical protein; COG2202 FOG: PAS/PAC domain.
 
0.989
EAR09148.1
Hypothetical tryptophan-rich sensor protein; COG0642 Signal transduction histidine kinase.
 
 0.988
EAR08758.1
Sensor protein LuxQ; COG0642 Signal transduction histidine kinase.
 
 0.987
Your Current Organism:
Reinekea blandensis
NCBI taxonomy Id: 314283
Other names: R. blandensis MED297, Reinekea blandensis MED297, Reinekea blandensis str. MED297, Reinekea blandensis strain MED297, Reinekea sp. MED297
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.