STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAR11328.1TRAP dicarboxylate transporter, DctQ subunit; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component. (208 aa)    
Predicted Functional Partners:
EAR11327.1
TRAP dicarboxylate transporter, DctM subunit, putative; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
 0.992
EAR11329.1
TRAP dicarboxylate transporter, DctP subunit; COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component.
 
  
 0.939
EAR11288.1
TRAP dicarboxylate transporter, DctM subunit; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
 0.880
EAR08618.1
TRAP-T family transporter, large inner membrane subunit; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
  
 0.863
EAR10271.1
C4-dicarboxylate permease (large subunit), probably cold-shock inducible; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
  
 0.863
EAR08283.1
Transporter, MFS superfamily protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.626
EAR08633.1
COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
  
 0.607
EAR08134.1
COG3239 Fatty acid desaturase.
  
     0.601
EAR08616.1
TRAP family transporter, periplasmic substrate binding subunit; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
  
 0.522
EAR08135.1
Hypothetical protein; COG1396 Predicted transcriptional regulators.
  
     0.518
Your Current Organism:
Reinekea blandensis
NCBI taxonomy Id: 314283
Other names: R. blandensis MED297, Reinekea blandensis MED297, Reinekea blandensis str. MED297, Reinekea blandensis strain MED297, Reinekea sp. MED297
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