STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAQ97319.1Two-component response regulator CbrB. (482 aa)    
Predicted Functional Partners:
EAQ98811.2
Diguanylate cyclase (GGDEF) domain protein.
  
 0.948
EAQ97320.1
PAS domain protein S-box.
 
 
 0.928
EAQ97771.1
PAS domain protein S-box/diguanylate cyclase (GGDEF) domain protein.
  
 0.885
EAQ96635.1
Signal transduction histidine kinase.
  
 0.873
EAQ98995.1
RNA polymerase, sigma 54 subunit, RpoN/SigL; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.855
EAQ98346.1
Signal transduction histidine kinase.
  
 0.789
EAQ97245.1
Signal transduction histidine kinase.
  
 0.766
EAQ95890.1
GAF domain protein; FOG.
   
 0.753
EAQ97462.1
PAS/PAC sensor signal transduction histidine kinase.
 
 0.705
EAQ99511.1
Signal transduction histidine kinase.
   
 0.651
Your Current Organism:
Congregibacter litoralis
NCBI taxonomy Id: 314285
Other names: C. litoralis KT71, Congregibacter litoralis KT71, Congregibacter litoralis str. KT71, Congregibacter litoralis strain KT71, gamma proteobacterium KT71, unknown marine gamma proteobacterium NOR5
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