STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAS46676.1Putative transcriptional regulator (AraC family); COG2207 AraC-type DNA-binding domain-containing proteins. (337 aa)    
Predicted Functional Partners:
EAS46675.1
Hypothetical protein; COG2030 Acyl dehydratase.
 
     0.626
EAS48157.1
Hypothetical protein; COG3687 Predicted metal-dependent hydrolase.
  
     0.614
rpoA
DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.527
EAS46677.1
Putative metalloprotease; COG1026 Predicted Zn-dependent peptidases, insulinase-like.
       0.470
cmoA
Methyltransferase; Catalyzes the conversion of S-adenosyl-L-methionine (SAM) to carboxy-S-adenosyl-L-methionine (Cx-SAM).
       0.470
EAS46674.1
COG1960 Acyl-CoA dehydrogenases.
       0.464
EAS47112.1
Alginate biosynthesis protein AlgZ/FimS; COG2972 Predicted signal transduction protein with a C-terminal ATPase domain.
  
  
  0.458
EAS46648.1
Sensor histidine kinase; COG3275 Putative regulator of cell autolysis.
  
  
  0.415
Your Current Organism:
gamma proteobacterium HTCC2207
NCBI taxonomy Id: 314287
Other names: g. proteobacterium HTCC2207, marine gamma proteobacterium HTCC2207
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