STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAS47329.1Hypothetical protein; COG0697 Permeases of the drug/metabolite transporter (DMT) superfamily. (309 aa)    
Predicted Functional Partners:
EAS47328.1
Hypothetical protein; COG1280 Putative threonine efflux protein.
 
     0.764
EAS47327.1
COG0604 NADPH:quinone reductase and related Zn-dependent oxidoreductases.
       0.554
greB
Transcription elongation factor GreB; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length.
       0.543
EAS47325.1
Hypothetical protein; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases.
       0.543
EAS47326.1
Putative Sui1 family protein; COG0023 Translation initiation factor 1 (eIF-1/SUI1) and related proteins.
       0.543
EAS47330.1
Outer membrane protein.
       0.411
EAS46595.1
Phosphate acetyltransferase; COG0281 Malic enzyme.
     
 0.406
Your Current Organism:
gamma proteobacterium HTCC2207
NCBI taxonomy Id: 314287
Other names: g. proteobacterium HTCC2207, marine gamma proteobacterium HTCC2207
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.