close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_00185 Proteins of unknown function that are similar to other proteins. (82 aa)    
Predicted Functional Partners:
ychF
Putative GTP-binding protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
  
  
 0.927
gidB
Methyltransferase GidB (Glucose Inhibited Cell Division protein B); Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
 
     0.887
parA
Chromosome partitioning ATPase.
  
    0.861
parB2
Chromosome partitioning protein, DNA-binding exonuclease; Belongs to the ParB family.
       0.856
LCA_0020
Hypothetical integral membrane protein.
       0.856
parB1
Chromosome partitioning protein, DNA-binding exonuclease; Belongs to the ParB family.
       0.844
LCA_1250
5 Proteins of unknown function that are similar to other proteins.
  
     0.766
LCA_0021
Putative lipase/esterase.
       0.712
LCA_0388
5 Proteins of unknown function that are similar to other proteins; Belongs to the UPF0297 family.
  
     0.692
LCA_0886
5 Proteins of unknown function that are similar to other proteins.
  
     0.412
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.