Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCA_00185 Proteins of unknown function that are similar to other proteins. (82 aa)    
Predicted Functional Partners:
ychF
Putative GTP-binding protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
  
  
 0.945
gidB
Methyltransferase GidB (Glucose Inhibited Cell Division protein B); Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
 
     0.870
parA
Chromosome partitioning ATPase.
       0.835
parB2
Chromosome partitioning protein, DNA-binding exonuclease; Belongs to the ParB family.
       0.835
LCA_0020
Hypothetical integral membrane protein.
       0.835
parB1
Chromosome partitioning protein, DNA-binding exonuclease; Belongs to the ParB family.
       0.821
LCA_1250
5 Proteins of unknown function that are similar to other proteins.
  
     0.766
LCA_0021
Putative lipase/esterase.
       0.709
LCA_0388
5 Proteins of unknown function that are similar to other proteins; Belongs to the UPF0297 family.
  
     0.692
pth
Aminoacyl-tRNA hydrolase (Peptidyl-tRNA hydrolase); The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
     
 0.482
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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