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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_00275 Proteins of unknown function that are similar to other proteins; Belongs to the HesB/IscA family. (121 aa)    
Predicted Functional Partners:
LCA_0028
Hypothetical protein, DegV family.
       0.568
LCA_0026
5 Proteins of unknown function that are similar to other proteins.
       0.538
LCA_1492
5 Proteins of unknown function that are similar to other proteins.
  
     0.536
LCA_0429
Putative phosphoesterase.
  
     0.535
LCA_0025
Hypothetical membrane protein.
       0.528
LCA_1663
5 Proteins of unknown function that are similar to other proteins.
  
     0.500
LCA_0902
6 Protein of unknown function, without similarity to other proteins.
  
     0.499
LCA_1536
5 Proteins of unknown function that are similar to other proteins.
  
     0.470
LCA_1617
5 Proteins of unknown function that are similar to other proteins.
  
     0.452
LCA_1330
5 Proteins of unknown function that are similar to other proteins.
  
     0.422
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.