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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_0115Hypothetical cell surface protein precursor. (256 aa)    
Predicted Functional Partners:
LCA_0113
6 Protein of unknown function, without similarity to other proteins.
  
    0.777
LCA_0114
Hypothetical cell surface protein precursor.
       0.773
LCA_0118
6 Protein of unknown function, without similarity to other proteins.
    
 0.686
ftsK
Cell division DNA translocase FtsK; Belongs to the FtsK/SpoIIIE/SftA family.
  
 
 0.641
LCA_0112
6 Protein of unknown function, without similarity to other proteins.
  
    0.624
LCA_0111
5 Proteins of unknown function that are similar to other proteins.
       0.618
LCA_0110
Hypothetical cell surface protein precursor.
       0.577
LCA_0109
Putative transcriptional regulator, Fur family; Belongs to the Fur family.
       0.576
LCA_1734
Hypothetical extracellular protein precursor.
  
 
 0.554
LCA_1287
Hypothetical cell surface protein precursor.
  
 
 0.498
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.