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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_01636 Protein of unknown function, without similarity to other proteins. (84 aa)    
Predicted Functional Partners:
LCA_0164
Putative serine/tyrosine protein phosphatase.
       0.655
LCA_0165
Putative oxidoreductase, short chain dehydrogenase/reductase family.
       0.655
LCA_0162
Putative Bifunctional glycosyl transferase, family 8.
       0.521
LCA_0166
Hypothetical Integral membrane protein.
       0.428
LCA_0167
6 Protein of unknown function, without similarity to other proteins.
       0.428
LCA_0168
6 Protein of unknown function, without similarity to other proteins.
       0.420
LCA_0169
Putative general stress protein.
       0.401
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.