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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_0165Putative oxidoreductase, short chain dehydrogenase/reductase family. (296 aa)    
Predicted Functional Partners:
LCA_0164
Putative serine/tyrosine protein phosphatase.
   
   0.855
LCA_0163
6 Protein of unknown function, without similarity to other proteins.
       0.655
fabF
3-oxoacyl-[acyl carrier protein] synthetase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
  
 
 0.586
fabD
Malonyl-CoA:ACP transacylase.
  
 
 0.574
LCA_1182
Cytochrome P450 (C-terminal fragment), truncated.
  
 
 0.555
LCA_0162
Putative Bifunctional glycosyl transferase, family 8.
 
    0.535
fabZ1
(3R)-hydroxymyristoyl-[acyl-carrier protein] dehydratase.
  
 
 0.533
CAI55487.1
Cytochrome P450 (N-terminal fragment), truncated.
  
 
 0.530
polA
DNA-directed DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
   
 
 0.521
adhE
Bifunctional enzyme: alcohol dehydrogenase, acetaldehyde dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.514
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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