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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_0169Putative general stress protein. (142 aa)    
Predicted Functional Partners:
LCA_0167
6 Protein of unknown function, without similarity to other proteins.
 
    0.996
LCA_0166
Hypothetical Integral membrane protein.
 
  
 0.885
LCA_0170
Putative general stress protein.
 
    
0.781
LCA_0168
6 Protein of unknown function, without similarity to other proteins.
       0.732
LCA_1365
5 Proteins of unknown function that are similar to other proteins; Belongs to the UPF0337 (CsbD) family.
 
   
 0.476
LCA_0164
Putative serine/tyrosine protein phosphatase.
       0.462
LCA_0165
Putative oxidoreductase, short chain dehydrogenase/reductase family.
       0.462
LCA_0163
6 Protein of unknown function, without similarity to other proteins.
       0.401
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.