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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsURibose transport protein; Could be involved in the uptake of ribose; Belongs to the GRP transporter (TC 2.A.7.5) family. (294 aa)    
Predicted Functional Partners:
rbsD
Ribose mutarotase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
  
  
 0.919
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
  
 0.909
rbsR
Ribose operon transcriptional regulator, LacI family.
     
 0.905
ack1
Acetate kinase (Acetokinase); Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
     
 0.650
gpm3
Phosphoglycerate mutase; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
     
 0.619
LCA_0205
Putative drug:H(+) antiporter; Belongs to the major facilitator superfamily.
     
 0.601
LCA_0204
Putative transcriptional regulator, PadR family.
       0.595
LCA_0199
5 Proteins of unknown function that are similar to other proteins.
       0.508
glk
Glucokinase.
 
   
 0.464
LCA_0294
Hypothetical lipoprotein precursor.
  
     0.455
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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