STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pepD3Dipeptidase D-type (U34 family). (473 aa)    
Predicted Functional Partners:
LCA_0321
Hypothetical integral membrane protein.
       0.773
sdhA
L-serine dehydratase, alpha subunit (L-serine deaminase); Belongs to the iron-sulfur dependent L-serine dehydratase family.
     
 0.665
LCA_0318
Putative oligopeptide transporter.
       0.636
LCA_0319
5 Proteins of unknown function that are similar to other proteins.
       0.636
sdhB
L-serine dehydratase, beta subunit (L-serine deaminase); Belongs to the iron-sulfur dependent L-serine dehydratase family.
     
 0.635
kbl
2-amino-3-ketobutyrate coenzyme A ligase (Glycine acetyltransferase).
   
  
 0.626
LCA_1190
Putative 4-carboxymuconolactone decarboxylase.
      
 0.617
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.