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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arcDArginine/ornithine antiporter. (475 aa)    
Predicted Functional Partners:
arcA
Arginine deiminase (Arginine dihydrolase).
 
  
 0.972
arcT
Putative aminotransferase.
 
  
 0.934
arcC
Carbamate kinase; Belongs to the carbamate kinase family.
  
  
 0.918
arcB
Ornithine transcarbamoylase (Catabolic OTCase); Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
 
  
 0.902
arcR
Arginine deiminase pathway transcriptional regulator, Crp family.
 
   
 0.896
LCA_0071
Putative carbamate kinase; Belongs to the carbamate kinase family.
  
  
 0.726
LCA_0376
Putative transport protein.
  
    0.501
treC
Trehalose-6-phosphate phosphoglucohydrolase (Phosphotrehalase).
   
 0.480
dexB
Glucan 1,6-alpha-glucosidase (dextran glucosidase).
   
 0.480
queA
S-adenosylmethionine:tRNAribosyltransferase- isomerase; Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).
  
    0.401
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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