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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbp1BBifunctional glycosyltransferase/transpeptidase penicillin-binding protein 1B. (851 aa)    
Predicted Functional Partners:
pbp2A
Bifunctional glycolsyltransferase/transpeptidase penicillin binding protein 2A.
  
  
0.939
pbp1A
Bifunctional glycosyltransferase/transpeptidase penicillin-binding protein 1A.
  
  
 
0.926
dacA
D-alanyl-D-alanine carboxypeptidase precursor; Belongs to the peptidase S11 family.
  
 
 0.913
LCA_0392
Hypothetical integral membrane protein.
 
     0.769
pbp2B1
Bifunctional dimerisation/transpeptidase penicillin-binding 2B.
 
 
 
 0.721
ftsW
Integral membrane cell division protein, FtsW; Belongs to the SEDS family.
 
 
 
 0.707
LCA_1121
Hypothetical extracellular peptide precursor.
  
     0.670
mltG
Hypothetical protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
 
   
 0.656
gpsB
Hypothetical protein, DivIVA homolg; Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation.
   
 
 0.641
LCA_0040
5 Proteins of unknown function that are similar to other proteins.
  
     0.624
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.