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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_0457Putative transport protein. (281 aa)    
Predicted Functional Partners:
LCA_0458
Hypothetical integral membrane protein.
 
  
 0.973
LCA_0455
5 Proteins of unknown function that are similar to other proteins.
       0.724
LCA_0456
5 Proteins of unknown function that are similar to other proteins.
       0.724
LCA_0454
Putative oxidoreductase, short-chain dehydrogenase/reductase family.
       0.665
LCA_0453
5 Proteins of unknown function that are similar to other proteins.
       0.664
LCA_0452
5 Proteins of unknown function that are similar to other proteins.
       0.473
pheT
Phenylalanyl-tRNA synthetase, beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.439
htrA
Serine protease HtrA precursor, Trypsin family.
   
 
 0.418
LCA_0499
Hypothetical integral membrane protein.
   
 
 0.418
LCA_0314
6 Protein of unknown function, without similarity to other proteins.
       0.404
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.