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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_04835 Proteins of unknown function that are similar to other proteins. (434 aa)    
Predicted Functional Partners:
LCA_0482
5 Proteins of unknown function that are similar to other proteins.
 
  
 0.984
LCA_0484
Putative oxidoreductase, short-chain dehydrogenase/reductase family.
   
   0.866
LCA_0991
5 Proteins of unknown function that are similar to other proteins.
   
 
 0.815
pgsA
CDP-diacylglycerol--glycerol-3-phosphate3- phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
     
 0.760
LCA_0485
5 Proteins of unknown function that are similar to other proteins.
       0.753
ftsK
Cell division DNA translocase FtsK; Belongs to the FtsK/SpoIIIE/SftA family.
       0.704
atpH
H(+)-transporting two-sector ATPase (ATP synthase), delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family.
  
 
 0.703
atpA
H(+)-transporting two-sector ATPase (ATP synthase), alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family.
   
 
 0.655
dgk
Deoxyguanosine kinase.
   
 
 0.651
LCA_0110
Hypothetical cell surface protein precursor.
    
 
 0.644
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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