Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCA_0549Two-component system, response regulator. (201 aa)    
Predicted Functional Partners:
LCA_0548
Two-component system, sensor histidine kinase (C-terminal fragment), authentic frameshift.
 
 0.997
LCA_0545
Putative drug ABC exporter, membrane-spanning subunit.
 
  
 0.955
LCA_0544
Putative drug ABC exporter, ATP-binding subunit.
 
  
 0.943
LCA_1370
Two-component system, sensor histidine kinase.
 
 0.922
LCA_0547
Two-component system, sensor histidine kinase (N-terminal fragment), authentic frameshift.
  
 
 0.880
LCA_0546
6 Protein of unknown function, without similarity to other proteins.
  
 
 0.866
LCA_0550
6 Protein of unknown function, without similarity to other proteins.
       0.605
LCA_0543
Putative 3-methy-adenine DNA glycosylase I; Belongs to the DNA glycosylase MPG family.
       0.525
LCA_0692
Putative serine/threonine protein kinase.
  
  
 0.486
LCA_0551
Putative oligopeptide ABC transporter, substrate-binding lipoprotein precursor.
  
    0.482
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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