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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_05506 Protein of unknown function, without similarity to other proteins. (108 aa)    
Predicted Functional Partners:
LCA_0547
Two-component system, sensor histidine kinase (N-terminal fragment), authentic frameshift.
       0.605
LCA_0548
Two-component system, sensor histidine kinase (C-terminal fragment), authentic frameshift.
       0.605
LCA_0549
Two-component system, response regulator.
       0.605
LCA_0544
Putative drug ABC exporter, ATP-binding subunit.
       0.586
LCA_0545
Putative drug ABC exporter, membrane-spanning subunit.
       0.586
LCA_0546
6 Protein of unknown function, without similarity to other proteins.
       0.586
LCA_0551
Putative oligopeptide ABC transporter, substrate-binding lipoprotein precursor.
       0.584
LCA_0552
Organic hydroperoxide resistance protein.
       0.453
LCA_0543
Putative 3-methy-adenine DNA glycosylase I; Belongs to the DNA glycosylase MPG family.
       0.423
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.