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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_0551Putative oligopeptide ABC transporter, substrate-binding lipoprotein precursor. (546 aa)    
Predicted Functional Partners:
oppB
Oligopeptide ABC transporter, membrane-spanning subunit.
 
 0.990
oppC
Oligopeptide ABC transporter, membrane-spanning subunit.
 
 0.990
oppD
Oligopeptide ABC transporter, ATP-binding subunit; Belongs to the ABC transporter superfamily.
 
 0.988
oppF
Oligopeptide ABC transporter, ATP-binding subunit; Belongs to the ABC transporter superfamily.
 
 0.984
oppA
Oligopeptide ABC transporter, substrate-binding lipoprotein precursor.
  
  
 
0.915
LCA_0545
Putative drug ABC exporter, membrane-spanning subunit.
    
  0.634
LCA_0552
Organic hydroperoxide resistance protein.
       0.588
LCA_0550
6 Protein of unknown function, without similarity to other proteins.
       0.584
LCA_1057
Putative amino acid ABC transporter, substrate binding/permease subunit.
  
 
 0.499
LCA_1497
Putative glutamine/glutamate ABC transporter, membrane-spanning/substrate-binding subunit precursor.
  
 
 0.499
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.