Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCA_0552Organic hydroperoxide resistance protein. (135 aa)    
Predicted Functional Partners:
LCA_0529
Putative transcriptional regulator, MarR family.
 
  
 0.662
katA
Catalase; Belongs to the catalase family.
  
  
 0.626
LCA_1782
Putative ferritin-like DNA-binding protein (oxidative damage protectant) (dps-type); Belongs to the Dps family.
  
  
 0.621
LCA_0551
Putative oligopeptide ABC transporter, substrate-binding lipoprotein precursor.
       0.588
LCA_1365
5 Proteins of unknown function that are similar to other proteins; Belongs to the UPF0337 (CsbD) family.
  
  
 0.507
LCA_1715
5 Proteins of unknown function that are similar to other proteins.
  
  
 0.479
LCA_0162
Putative Bifunctional glycosyl transferase, family 8.
   
    0.460
LCA_1474
Putative bifunctional glycosyl transferase, family 8.
   
    0.460
LCA_0550
6 Protein of unknown function, without similarity to other proteins.
       0.453
LCA_0030
Putative aldo/keto reductase (oxidoreductase).
  
    0.445
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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